Configurations

[input]
name = "My File"
folder_path = "my_project/"
file_name = "my_measurement.fast5"
resample_to_freq = 5000.0

[output]
path = "./"

[env]
processes = 2
verbose = 0

[plot]
out = "./Figures"
channels_resample_to_freq = 50
channels_current_range = [
  0,
  300,
]
events_current_range = [
  0,
  300,
]
autoscale = "fixed"
events_resample_to_freq = 5000.0
events_filter_freq = 1000.0

[event_finding]
open_state_range = [
  200,
  300,
]
voltage_range = [
  175,
  185,
]
closing_iterations = 10
boundary_trim = [
  1,
  1,
]
n_components = 3
degree = 2
min_frac_os = 0.01
min_duration = 1

[step_finding]
sensitivity = 3.0
min_level_length = 10

[event_filtering]
min_duration = 1
min_n_steps = 45
max_n_steps = 800
min_binned_entropy_of_means = 2.5
min_step_rate = 12.0
min_ios = 0
max_ios = 0

[boundary]
template_DNA_5_3 = "TCCTTTTATCGTCATCATCTTTGTAATCGCCGCT"
trim_right = 8
ref_length = 54
segment_step_to_end = 4
window_length = 40